Alternate methods of analysis using ADMIXTURE & PCAs

Alternate methods of analysis using ADMIXTURE & PCAs

The use of PCAs and ADMIXTURE program is widespread in the study of population histories, although the most common way those programs are used, using all available SNPs, including common variants, pruned for maximizing the genotype rate among samples in the dataset, may not be best for accurately inferring shared drift amongst populations. Here I outline some of the benefits of placing upper thresholds¬† on […]

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